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1

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

David L Hyten, Steven B Cannon, Qijian Song, Nathan Weeks, Edward W Fickus, Randy C Shoemaker, James E Specht, Andrew D Farmer, Gregory D May, Perry B Cregan

Journal:

Year:

2010

Language:

english

File:

PDF, 197 KB

english, 2010

2

Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean

Yung-Tsi Bolon, Bindu Joseph, Steven B Cannon, Michelle A Graham, Brian W Diers, Andrew D Farmer, Gregory D May, Gary J Muehlbauer, James E Specht, Zheng Jin Tu, Nathan Weeks, Wayne W Xu, Randy C Shoe

Journal:

BMC Plant Biology

Year:

2010

Language:

english

File:

PDF, 3.25 MB

english, 2010

3

Impact of oncology-related direct-to-consumer advertising

Abel, Gregory A., Chen, Kun, Taback, Nathan, Hassett, Michael J., Schrag, Deborah, Weeks, Jane C.

Journal:

Year:

2013

Language:

english

File:

PDF, 410 KB

english, 2013

4

The genetic code as expressed through relationships between mRNA structure and protein function

Mauger, David M., Siegfried, Nathan A., Weeks, Kevin M.

Journal:

Year:

2013

Language:

english

File:

PDF, 792 KB

english, 2013

5

Use of Stereotactic Radiosurgery for Brain Metastases From Non-Small Cell Lung Cancer in the United States

Halasz, Lia M., Weeks, Jane C., Neville, Bridget A., Taback, Nathan, Punglia, Rinaa S.

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2013

Language:

english

File:

PDF, 305 KB

english, 2013

6

Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA

Steen, Kady-Ann, Siegfried, Nathan A, Weeks, Kevin M

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 790 KB

english, 2011

7

A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms

Kudapa, Himabindu, Bharti, Arvind K., Cannon, Steven B., Farmer, Andrew D., Mulaosmanovic, Benjamin, Kramer, Robin, Bohra, Abhishek, Weeks, Nathan T., Crow, John A., Tuteja, Reetu, Shah, Trushar, Dutt

Journal:

Molecular Plant

Year:

2012

Language:

english

File:

PDF, 1.46 MB

english, 2012

8

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

Siegfried, Nathan A, Busan, Steven, Rice, Greggory M, Nelson, Julie A E, Weeks, Kevin M

Journal:

Year:

2014

Language:

english

File:

PDF, 2.01 MB

english, 2014

9

Gene expression patterns are correlated with genomic and genic structure in soybean

Gustafson, Perry, Woody, Jenna L., Severin, Andrew J., Bolon, Yung-Tsi, Joseph, Bindu, Diers, Brian W., Farmer, Andrew D., Weeks, Nathan, Muehlbauer, Gary J., Nelson, Rex T., Grant, David, Specht, Jam

Journal:

Year:

2011

File:

PDF, 439 KB

2011

10

Book Reviews

WEEKS, THEODORE R., JACOBSM, JACK, KAPLAN, GREGORY, ABRAMS, NATHAN, GARTNER, LLOYD P., ABRAMS, NATHAN, LEVENE, MARK, MILLER, MALCOLM

Journal:

Jewish Culture and History

Year:

2002

Language:

english

File:

PDF, 1.48 MB

english, 2002

11

[IEEE 2013 IEEE International Conference on Cluster Computing (CLUSTER) - Indianapolis, IN, USA (2013.09.23-2013.09.27)] 2013 IEEE International Conference on Cluster Computing (CLUSTER) - Parallelization of software pipelines using the mpififo Tool

Weeks, Nathan T., Kraeva, Marina, Luecke, Glenn R.

Year:

2013

Language:

english

File:

PDF, 193 KB

english, 2013

12

How do we manage cardiopulmonary bypass coagulopathy?

Welsh, Kerry J., Nedelcu, Elena, Bai, Yu, Wahed, Amer, Klein, Kimberly, Tint, Hlaing, Gregoric, Igor, Patel, Manish, Kar, Biswajit, Loyalka, Pranav, Nathan, Sriram, Loubser, Paul, Weeks, Phillip A., R

Journal:

Transfusion (Elsevier)

Year:

2014

Language:

english

File:

PDF, 95 KB

english, 2014

13

ipcmd: a command-line interface to System V semaphores and message queues

Weeks, Nathan T., Kraeva, Marina, Luecke, Glenn R.

Journal:

Concurrency and Computation: Practice and Experience

Year:

2014

Language:

english

File:

PDF, 2.90 MB

english, 2014

14

Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors

Koesterke, Lars, Koltes, James E., Weeks, Nathan T., Milfeld, Kent, Vaughn, Matthew W., Reecy, James M., Stanzione, Dan

Journal:

Concurrency and Computation: Practice and Experience

Year:

2014

Language:

english

File:

PDF, 1.05 MB

english, 2014

15

Invasive procedures in the elderly after stage IV cancer diagnosis

Kwok, Alvin C., Hu, Yue-Yung, Dodgion, Christopher M., Jiang, Wei, Ting, Gladys V., Taback, Nathan, Lipsitz, Stuart R., Weeks, Jane C., Greenberg, Caprice C.

Journal:

Journal of Surgical Research

Year:

2015

Language:

english

File:

PDF, 270 KB

english, 2015

16

Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress

Belamkar, Vikas, Weeks, Nathan T, Bharti, Arvind K, Farmer, Andrew D, Graham, Michelle A, Cannon, Steven B

Journal:

Year:

2014

Language:

english

File:

PDF, 2.11 MB

english, 2014

17

Validating Billing/Encounter Codes as Indicators of Lung, Colorectal, Breast, and Prostate Cancer Recurrence Using 2 Large Contemporary Cohorts

Hassett, Michael J., Ritzwoller, Debra P., Taback, Nathan, Carroll, Nikki, Cronin, Angel M., Ting, Gladys V., Schrag, Deb, Warren, Joan L., Hornbrook, Mark C., Weeks, Jane C.

Journal:

Year:

2014

Language:

english

File:

PDF, 216 KB

english, 2014

18

Improved Ticagrelor Antiplatelet Effect on Discontinuation of Phenytoin

Weeks, P., Sieg, A., Vahdat, K., Raissi, F., Nathan, S.

Journal:

Annals of Pharmacotherapy

Year:

2014

Language:

english

File:

PDF, 357 KB

english, 2014

19

Static sublimation purification process and characterization of LiZnP semiconductor material

Montag, Benjamin W., Reichenberger, Michael A., Edwards, Nathan, Ugorowski, Philip B., Sunder, Madhana, Weeks, Joseph, McGregor, Douglas S.

Journal:

Journal of Crystal Growth

Year:

2015

Language:

english

File:

PDF, 791 KB

english, 2015

20

Mobile Computing Platform With Decision Support Modules for Hemotherapy

Huang, R. S. P., Nedelcu, E., Bai, Y., Wahed, A., Klein, K., Gregoric, I., Patel, M., Kar, B., Loyalka, P., Nathan, S., Loubser, P., Weeks, P. A., Radovancevic, R., Nguyen, A. N. D.

Journal:

American Journal of Clinical Pathology

Year:

2014

Language:

english

File:

PDF, 442 KB

english, 2014

21

The Proteasome Distinguishes between Heterotypic and Homotypic Lysine-11-Linked Polyubiquitin Chains

Grice, Guinevere L., Lobb, Ian T., Weekes, Michael P., Gygi, Steven P., Antrobus, Robin, Nathan, James A.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.90 MB

english, 2015

22

Interinstitutional Variation in Management Decisions for Treatment of 4 Common Types of Cancer

Weeks, Jane C., Uno, Hajime, Taback, Nathan, Ting, Gladys, Cronin, Angel, D'Amico, Thomas A., Friedberg, Jonathan W., Schrag, Deborah

Journal:

Annals of Internal Medicine

Year:

2014

Language:

english

File:

PDF, 239 KB

english, 2014

23

Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis

Smola, Matthew J, Rice, Greggory M, Busan, Steven, Siegfried, Nathan A, Weeks, Kevin M

Journal:

Nature Protocols

Year:

2015

Language:

english

File:

PDF, 2.92 MB

english, 2015

24

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family

Dash, Sudhansu, Campbell, Jacqueline D., Cannon, Ethalinda K.S., Cleary, Alan M., Huang, Wei, Kalberer, Scott R., Karingula, Vijay, Rice, Alex G., Singh, Jugpreet, Umale, Pooja E., Weeks, Nathan T., W

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.75 MB

english, 2016

25

[IEEE 2015 IEEE Trustcom/BigDataSE/ISPA - Helsinki, Finland (2015.8.20-2015.8.22)] 2015 IEEE Trustcom/BigDataSE/ISPA - Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters

Luecke, Glenn R., Weeks, Nathan T., Groth, Brandon M., Kraeva, Marina, Ma, Li, Kramer, Luke M., Koltes, James E., Reecy, James M.

Year:

2015

File:

PDF, 425 KB

2015

26

[IEEE 2015 IEEE Trustcom/BigDataSE/ISPA - Helsinki, Finland (2015.8.20-2015.8.22)] 2015 IEEE Trustcom/BigDataSE/ISPA - Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters

Luecke, Glenn R., Weeks, Nathan T., Groth, Brandon M., Kraeva, Marina, Ma, Li, Kramer, Luke M., Koltes, James E., Reecy, James M.

Year:

2015

Language:

english

File:

PDF, 425 KB

english, 2015

27

Carfilzomib-Rituximab Desensitization in Sensitized Heart Transplant Candidates: A Single Center Experience

Weeks, P., Sieg, A., Ling, M., Bai, Y., Nathan, S., Rajapreyar, I.

Journal:

The Journal of Heart and Lung Transplantation

Year:

2016

Language:

english

File:

PDF, 78 KB

english, 2016

28

Assessing the Impacts of Wastewater Phosphorus on Inland Lakes: Processes and Scale

Moran, Elizabeth C., Weeks, Nathan C.

Journal:

Proceedings of the Water Environment Federation

Year:

2012

Language:

english

File:

PDF, 408 KB

english, 2012

29

A pseudo-outbreak of disseminated cryptococcal disease after orthotopic heart transplantation

Kennedy, E., Vanichanan, J., Rajapreyar, I., Gonzalez, B., Nathan, S., Gregoric, I., Kar, B., Loyalka, P., Weeks, P., Chavez, V., Wanger, A., Ostrosky Zeichner, L.

Journal:

Year:

2016

Language:

english

File:

PDF, 96 KB

english, 2016

30

FIBROTIC ARCH AROUND THE DEEP BRANCH OF THE ULNAR NERVE IN THE HAND

LOTEM, MOSHE, GLOOBE, HANAN, NATHAN, HILEL, Weeks, Paul M.

Journal:

Plastic & Reconstructive Surgery

Year:

1973

File:

PDF, 221 KB

1973

31

Clinical Factors Implicated in Primary Graft Dysfunction After Heart Transplantation: A Single-center Experience

Quintana-Quezada, R.A., Rajapreyar, I., Postalian-Yrausquin, A., Yeh, Y.C., Choi, S., Akkanti, B., Sieg, A., Weeks, P., Patel, M., Patel, J., Nathan, S., Kar, B., Loyalka, P., Gregoric, I.

Journal:

Transplantation Proceedings

Year:

2016

Language:

english

File:

PDF, 281 KB

english, 2016

32

Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume

Belamkar, Vikas, Farmer, Andrew D., Weeks, Nathan T., Kalberer, Scott R., Blackmon, William J., Cannon, Steven B.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.57 MB

english, 2016

33

Treatment of Multiple Myeloma in a Heart Transplant Recipient

Xie, Lola, Jozwik, Bartosz, Weeks, Phillip, Buja, L. Maximilian, Brown, Robert, Nathan, Sriram, Rajagopal, Keshava, Paruthi, Christina, Kar, Biswajit, Loyalka, Pranav, Rajapreyar, Indranee

Journal:

Progress in Transplantation

Year:

2017

Language:

english

File:

PDF, 186 KB

english, 2017

34

Optimization of SAMtools sorting using OpenMP tasks

Weeks, Nathan T., Luecke, Glenn R.

Journal:

Cluster Computing

Year:

2017

Language:

english

File:

PDF, 1.04 MB

english, 2017

35

Bivalirudin for Suspected Pump Thrombosis in Patients with Left Ventricular Assist Devices: A Single-Center Experience

Weeks, P.A., Sieg, A., Rajapreyar, I., Nathan, S.

Journal:

The Journal of Heart and Lung Transplantation

Year:

2017

Language:

english

File:

PDF, 124 KB

english, 2017

36

Early Antibody Mediated Rejection Post Orthotopic Heart Transplantation: A Single Center Experience

Rajapreyar, I., Nathan, S., Ghotra, A., Nolan, M., Weeks, P., Sieg, a., Kar, B., Loyalka, P., Paruthi, C., Gregoric, I.

Journal:

The Journal of Heart and Lung Transplantation

Year:

2017

Language:

english

File:

PDF, 62 KB

english, 2017

37

End-of-Life Care Discussions Among Patients With Advanced Cancer

Mack, Jennifer W., Cronin, Angel, Taback, Nathan, Huskamp, Haiden A., Keating, Nancy L., Malin, Jennifer L., Earle, Craig C., Weeks, Jane C.

Journal:

Annals of Internal Medicine

Year:

2012

Language:

english

File:

PDF, 155 KB

english, 2012

38

Atomistic Modeling of Quantum Dots at Experimentally Relevant Scales Using Charge Equilibration

Weeks, Nathan, Tvrdy, Kevin

Journal:

Journal of Physical Chemistry A

Year:

2017

Language:

english

File:

PDF, 1.89 MB

english, 2017

39

Bivalirudin for left ventricular assist device thrombosis

Weeks, Phillip, Sieg, Adam, Rajapreyar, Indranee, Nathan, Sriram, Jumean, Marwan, Patel, Manish, Radovancevic, Rajko, Kar, Biswajit, Gregoric, Igor

Journal:

Journal of Thrombosis and Thrombolysis

Year:

2018

Language:

english

File:

PDF, 869 KB

english, 2018

40

[IEEE 2018 IEEE International Conference on Cluster Computing (CLUSTER) - Belfast (2018.9.10-2018.9.13)] 2018 IEEE International Conference on Cluster Computing (CLUSTER) - Challenges in Developing MPI Fault-Tolerant Fortran Applications

Weeks, Nathan, Luecke, Glenn, Maris, Pieter, Vary, James

Year:

2018

Language:

english

File:

PDF, 134 KB

english, 2018

41

Ten quick tips for sharing open genomic data

Brown, Anne V., Campbell, Jacqueline D., Assefa, Teshale, Grant, David, Nelson, Rex T., Weeks, Nathan T., Cannon, Steven B., Ouellette, Francis

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 298 KB

english, 2018

42

Comparative Efficacy of Bortezomib and Carfilzomib Desensitization Protocols in Highly Sensitized Cardiac Transplant Candidates

Sobhanian, M., Saltarrelli, J., Weeks, P., Nathan, S., Radovancevic, R., Kar, B., Gregoric, I.

Journal:

The Journal of Heart and Lung Transplantation

Year:

2019

Language:

english

File:

PDF, 530 KB

english, 2019

43

P075 Comparative efficacy of bortezomib and carfilzomib desensitization protocols in highly sensitized cardiac transplant candidates

Sobanian, Minoosh, Saltarrelli, Jerome, Weeks, Phillip, Nathan, Sriram, Radovancevic, Rajko, Kar, Biswajit, Gregoric, Igor

Journal:

Human Immunology

Year:

2019

Language:

english

File:

PDF, 70 KB

english, 2019

44

Development of a System for Postâmarketing Population Pharmacokinetic and Pharmacodynamic Studies using RealâWorld Data from Electronic Health Records

Choi, Leena, Beck, Cole, McNeer, Elizabeth, Weeks, Hannah L., Williams, Michael L., James, Nathan T., Niu, Xinnan, AbouâKhalil, Bassel W., Birdwell, Kelly A., Roden, Dan M., Stein, C. Michael, Bejan

Journal:

Clinical Pharmacology & Therapeutics

Year:

2020

Language:

english

File:

PDF, 8.66 MB

english, 2020

45

Risk of Pump Thrombosis and Stroke in Patients with ContinuousâFlow Left Ventricular Assist Devices and Gastrointestinal Bleeding

Szymanski, Thomas W, Weeks, Phillip A, Patel, Chandni J, Jezovnik, Mateja K, Gulbis, Brian, Nathan, Sriram S, Jumean, Marwan F, Radovancevic, Rajko, Kar, Biswajit, Gregoric, Igor D

Journal:

Artificial Organs

Year:

2020

File:

PDF, 7.18 MB

2020

46

Management of Plant and Arthropod Pests by Deer Farmers in Florida

Harmon, Laura E, Sayler, Katherine A, Burkett-Cadena, Nathan D, Wisely, Samantha M, Weeks, Emma N I, Gouge, Dawn

Journal:

Journal of Integrated Pest Management

Year:

2020

File:

PDF, 252 KB

2020

47

PO 8194âOPTIMISED INFORMED CONSENT FOR PARTICIPANTS IN A RANDOMISED CONTROLLED TRIAL IN RURAL UGANDA: A COMPARATIVE PROSPECTIVE COHORT STUDY

Ditai, James, Kanyago, Jesca, Nambozo, Rachael, Kanyago, Nathan, Abeso, Julian, Olupot, Peter, Carrol, Enitan, Gladstone, Melissa, Weeks, Andrew, Faragher, Brian, Medina-Lara, Antonietta, Storr, Julie

Journal:

BMJ Global Health

Year:

2019

File:

PDF, 62 KB

2019

48

A new decade and new data at SoyBase, the USDA-ARS soybean genetics and genomics database

Brown, Anne V, Conners, Shawn I, Huang, Wei, Wilkey, Andrew P, Grant, David, Weeks, Nathan T, Cannon, Steven B, Graham, Michelle A, Nelson, Rex T

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 2.22 MB

2020